PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0076s0190.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 451aa    MW: 48533.8 Da    PI: 9.0845
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0076s0190.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-055981123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ C+k F r  nL+ H r H
  Kaladp0076s0190.1.p 59 FVCEVCSKGFQRDQNLQLHRRGH 81
                         89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.28E-75881No hitNo description
Gene3DG3DSA:3.30.160.603.4E-55881IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9075981IPR007087Zinc finger, C2H2
SMARTSM003550.0435981IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
SMARTSM0035578101131IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.8E-5124157IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.28E-7131157No hitNo description
SMARTSM0035591136156IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MDNMTSSPPT ASGAGAEVSI SSAARNPPPK KRRNLPGMPD PNAVVISLSP QSLMATNRFV  60
CEVCSKGFQR DQNLQLHRRG HNLPWRLKQR NSEGEMRRKV YVCPEPSCIH HNPSRALGDL  120
TGIKKHYSRK HGEKKWKCDR CSKKYAVKSD CKAHMKTCGT REYKCDCGTL FSRRDSFITH  180
RAFCDALAEE NTKVQTAALI VDDTKPNEDM VVASSPTPPS PVTPAPTTIS PLLSFQSPDL  240
TDNSAVVTDQ SLATLAASSN SSRCTSYISG KISVFASIFA PSTETTSTSF SHFMSPLSQS  300
DHPLPPSSPK GDTGFNHPLT SPSLYLTCNS FAPFPMIPDL PPDHHHYASR SHKPIMSATA  360
LLQKAAQMGA TTSAGSSLLC GFSLAMPSSS SSTHQGQSAD TSSITQWSSH AKADNSVVTA  420
GLRLGLGFPA SDLYVQPTTL DLLGLTKTRH *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010664668.11e-145PREDICTED: zinc finger protein JACKDAW-like isoform X2
SwissprotQ9LVQ71e-111IDD1_ARATH; Protein indeterminate-domain 1
TrEMBLE0CQ241e-142E0CQ24_VITVI; Putative uncharacterized protein
STRINGVIT_18s0001g12220.t011e-142(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.14e-98indeterminate(ID)-domain 2